If I read "Note the change in/of venue" I would think that you are meeting in the Marriott hotel instead of the Hyatt. It's a pretty major change.
If I read "note the room change" I'd think that instead of the Aroostic Meeting Room, we'll be in the Cumberland Meeting Room. Same hotel, different room.
As Clive says, all are correct, but I find "room change" slightly more natural than "change in room."