Vincent Teo(i) He is taking the money in / from /at the bank. - Do you mean paying in or taking out/withdrawing?
(ii) He is withdrawing money from / in / at the bank. - He is withdrawing money from the bank.
He is paying money in the bank.
He is paying in money at the bank.
He is putting money into the bank.
He is making a deposit at the bank.
He is withdrawing money from the bank.
He is taking money out of the bank.
He is making a withdrawal at the bank.