Can one say:
1-Jeff said that Niles might have left with some of my books. If one is missing, I'll have to teach Niles a good lesson.
or:
2-Jeff said that Niles might have left with some of my books. If one of them is missing, I'll have to teach Niles a good lesson.
instead of:
3-Jeff said that Niles might have left with some of my books. If a particular one is missing, I'll have to teach Niles a good lesson.
Here the speaker is worried about one specific book and doesn't care about the others. I am not sure that 1 or 2 mean that. To me, 1 and 2 mean that if any book is missing, Niles will have to be taught a good lesson.