Hi,
Let's say a car travels from A to B and it takes/took 30 minutes.
Either sounds accepable to me, although I prefer present tense. One consideration is the word 'it'. Does 'it' refer to the car or is it a non-specific 'it' (eg It takes 6 hours to fly from Toronto to Vancouver')? For the later, I'd definitely use present tense.
Firstt, place a card on the desk. Next, apply chemical Y to the surface of the card. Since you didn't/don't soak the card in chemical X before applying chemical Y, the card will catch fire.
'Don't' is clearly wrong here, I guess for the reason you have mentioned below.
I believe in both sentences above, past tense verbs are needed. Although grammar rules say that instructions/hypothetical situations can take present tense, it is necessary to use past tense when refering to past actions, for example, instructions before the current instruction.
So, your point is well taken, but I think it's hard to generalize about all such situations.
Best wishes, Clive